2016/09/?? update: (coming soon)
| Function | Update list | Note (in Tranditional chinese) |
|---|---|---|
| Gene search | Promoter analysis => coexpression network
1. Interface: Use Cytoscape web javascript version to replace Cytoscape web flash version 2. New feature: A. More friendly interface B. Allow user to copy the gene list which are selected. C. Download the network (tab format) |
Promoter analysis 的結果頁中，看coexpression network的功能：
1. 介面 使用cytoscape web javascript版本來替換原先的flash版本，以避免未來各大游覽器不支援flash的狀況。 2. 特性 A. 變得更好用 B. 提供按鈕，可以讓使用者去複製他選擇的那些基因。 C. Network下載(為表格)。 |
| Gene group analysis | Gene group analysis result => Gene group analysis graph => coexpression network
1. Interface: Use Cytoscape web javascript version to replace Cytoscape web flash version 2. New feature: A. More friendly interface B. Allow user to copy the gene list which are selected. C. Download the network (tab format) |
Gene group analysis的結果頁中，可以去點連結看TF/TFBS在promoter的分布。在此頁下方，有coexpression network連結。此更新就是修改coexpression network。
1. 介面 使用cytoscape web javascript版本來替換原先的flash版本，以避免未來各大游覽器不支援flash的狀況。 2. 特性 A. 變得更好用 B. 提供按鈕，可以讓使用者去複製他選擇的那些基因。 C. Network下載(為表格)。 |
2016/08/16 update:
| Function | Update list | Note (in Tranditional chinese) |
|---|---|---|
| Gene group analysis | Multiple promoter
analysis: 1. Download file: add the file extention name (none => .txt) 2. The Matrix associated TF family and TF IDs are added. (Separated with ";") Maize, rice and Arabidopsis: 1. Download file: add the file extention name (none => .txt) 2. In *Gene_group.allTFBS.txt file, the TF name and TF family are added. |
Multiple promoter
analysis: 1.Occurence檔的結果下載檔加上.txt的附檔名。 2.與此matrix相關的TF都已經列出(用分號隔開)。在未來，若新增了TF batch search，那便可將此結果丟到TF batch searc查詢。 Maize, rice and Arabidopsis: 1. Occurence檔的結果下載檔加上.txt的附檔名。 2. 在TFBS的掃描結果檔，再額外新增TF name和TF family資訊。 |